HTSvis - a web app for exploratory data analysis

HTSvis is an R/Shiny open-source web application for interactive visualization and exploratory analysis of data from arrayed high-throughput screens. The web application is either available via http://htsvis.dkfz.de/ or can be installed as an R package as described here. Shiny allows that the usage of the application in the default web browser does not require any bioinformatics training. Input data can either be a result file obtained upon analysis with the Bioconductor/R package cellHTS or a generic table with raw or analyzed data from, e.g. a high-content microscopy screen. Data has to be aggregated per well to be imported in HTSvis. Tools to aggregate single cell data from microscopy screens are available in CellProfiler Analyst, for example.

Reference

Scheeder C, Heigwer F, Boutros M. (2017). HTSvis: a web app for exploratory data analysis and visualization of arrayed high-throughput screens. Bioinformatics 33:2960-2962.